Samples File Detail

Download Sample Download Template

Column Name

Type (Size)

Format / Value Checks

Definition / Examples / Comments

nrgr_bio_id

string(14)

Case sensitive.

Definition: IBX (formerly RUCDR) sample id, AKA RUID

Sample value: 03C19340

IDs are usually alphanumeric.

ind_id

string(30)

Sample value: 10-10073

material

string(10)

Valid Values:

DNA-EP = DNA Externally Produced

DNA-LCL = DNA from Lymphoblastoid cell line

DNA-Saliva = DNA from saliva

DNA-WB = DNA from Whole Blood

DNA-EPBC = DNA from Externally Produced Buffy Coat

miRNA-WB = miRNA from Whole Blood

NGNCDNA = non-coding DNA (?)

RNA-LCL = RNA from Lymphoblastoid cell line

RNA-WB = RNA from Whole Blood

LCL = Lymphoblastoid cell line

CPL = Cryopreserved Lymphocytes

FCL = Fibroblast cell line

IPSC = Induced Pluripotent Cell Line

EPPL = Externally produced Plasma

OE = Olfactory Epithelial

PL = Plasma

Urine

amount

decimal

For DNA-WB, DNA-EP, DNA-Saliva <= 5. For DNA-LCL <= 25. (unit = µg)

For miRNA-WB, NGNCDNA, RNA-LCL, RNA-WB, EPPL, PL, and Urine <= 1 (unit = aliquot)

For cell line materials LCL, CPL, FCL, IPSC, and OE the amount column will be ignored

Usually specified in 4 decimals, 2 is acceptable

µg or aliquot

cell_type

string(7)

Valid Values:

LIVE

FROZEN

Required if material = LCL, CPL, FCL, IPSC, or OE

For all other materials the cell_type column will be ignored

purpose

string

Valid Values:

Valid for "DNA" materials
	DNA-SNP	SNP panel genotyping
	DNA-WES	Whole exome sequencing
	DNA-WGS	Whole genome sequencing
	DNA-BGE	Blended Genome/Exome Sequencing
	DNA-TS	Targeted sequencing
	DNA-TG	Targeted genotyping
	DNA-MA	Methylation assay
	DNA-CNV	CNV analysis
	OTHER	Other DNA method - please describe in notes
Valid for "RNA" materials incl. NGNCDNA and miRNA-WB
	RNA-QPCR	QPCR
	RNA-EA	Expression Assay
	RNA-SEQ	RNAseq
	OTHER	Other RNA method - please describe in notes
Valid for "LCL"
	CELL-REPROG	Reprogramming
	CELL-EA	Expression Assay
	OTHER	Other cell method - please describe in notes
Valid for "CPL"
	CPL-REQ	Requestor derived iPSC
	CPL-SAM	Sampled derived iPSC
	OTHER	Other CPL method - please describe in notes
Valid for "iPSC" or "FCL"
	CELL-REPROG	Reprogramming
	CELL-EA	Expression Assay
OTHER	Other cell method - please describe in notes
Valid for "EPPL", "OE", "PL", "Urine"
	OTHER-IPSC	iPSC
	OTHER-EA	Expression Assay
	OTHER	Other - please describe in notes

notes

string(1000)

Required if purpose is OTHER.

Use this field to describe the purpose for sample request if "other". Also use this field to describe desired sample concentration.